Genome Sequencing Shows 771 Variants Of Concerns And A Novel Variant Of Coronavirus In India: Health Ministry

Genome sequencing of the COVID-19 viruses circulating in India has shown over 770 variants of concerns (VOCs) as well as a novel variant in the country, according to the Health Ministry.

The Health Ministry had established the Indian SARS-CoV-2 Consortium on Genomics (INSACOG), a grouping of 10 National Laboratories, on 25 December last year. The consortium was set up for carrying out genomic sequencing and analysis of circulating COVID-19 viruses, and correlating epidemiological trends with genomic variants.

Genomic variants of various viruses are a natural phenomenon and are found in almost all countries.

"Since INSACOG initiated its work, 771 variants of concerns (VOCs) have been detected in a total of 10787 positive samples shared by States/UTs. These include 736 samples positive for viruses of the UK (B.1.1.7) lineage. 34 samples were found positive for viruses of the South African (B.1.351) lineage. one sample was found positive for viruses of the Brazilian (P.1) lineage," the Health Ministry said on Wednesday (24 March).

The samples with these VOCs have been identified in 18 States of the country, the ministry added.

Genome sequencing and analysis have been carried out on samples from arriving international travelers, contacts of those positive for VOC and community samples from most of the states at INSACOG partner laboratories which are ten in number, it said.

These mutations have been found in about 15-20 per cent of samples and do not match any previously catalogued VOCs, it added.

These have been categorized as VOCs but require the same epidemiological and public health response of “increased testing, comprehensive tracking of close contacts, prompt isolation of positive cases & contacts as well as treatment as per National Treatment Protocol” by the states and UTs.

"From Kerala, 2032 samples (from all 14 districts) have been sequenced. The N440K variant that is associated with immune escape has been found in 123 samples from 11 districts. This variant was earlier found in 33 per cent of samples from Andhra Pradesh, and in 53 of 104 samples from Telangana," the ministry said.

This variant has also been reported from 16 other countries including UK, Denmark, Singapore, Japan and Australia. As of now these can be at best said to be variant under investigation, the ministry added.

The ministry, however, clarified that though VOCs and a new double mutant variant have been found in India, these have not been detected in numbers sufficient to either establish or direct relationship or explain the rapid increase in cases in some states.

Genomic sequencing and epidemiological studies are continuing to further analyze the situation, it added.